FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510401
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31240.6120677663249092No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10240.20062656617052083No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8170.1600702192981597No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7890.1545843366294345No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6310.12362828442734242No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5390.10560324137295969No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)