FastQCFastQC Report
Wed 31 May 2023
EGAF00007930587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468076
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65801.4057546210444458No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22010.4702227843341679No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10020.2140678009554004No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9110.1946265136430836No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8300.17732163152992247No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6220.13288440338748408No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5170.11045214879634932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)