FastQCFastQC Report
Wed 31 May 2023
EGAF00007930591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393770
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57981.4724331462528888No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25060.6364121187495239No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23530.59755694948828No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG17830.4528023973385479No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16600.4215658887167636No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16260.41293140665870937No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15150.3847423622927089No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14600.37077481778703303No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14320.3636640678568708No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC13550.3441095055489245No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11660.2961119435203291No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG11620.2950961221017345No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10910.27706529192168017No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10780.27376387231124766No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8910.2262742209919496No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8860.22500444421870636No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8130.20646570332935468No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7320.1858953196028138No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6540.1660868019402189No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6530.16583284658557024No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5920.15034156995200243No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5710.14500850750438074No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5660.14373873073113747No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5170.1312949183533535No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4970.12621581126038042No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA4840.12291439164994794No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4720.11986692739416412No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4230.10742311501638012No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC3940.10005840973156918No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)