FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424085
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11900.28060412417322No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10120.23863140643974676No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7150.16859827628895152No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6960.16411804237358077No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6380.15044153884244904No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4820.11365646037940506No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4730.11153424431422947No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4280.1009231639883514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)