FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477886
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11940.24985038272726132No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8620.18037774699405298No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8160.17075202035631928No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7370.15422088113064622No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6810.14250260522384No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6230.13036581946321926No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6150.12869178004796122No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6100.12764550541342495No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG5470.11446244501826794No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG4980.10420895359981251No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4830.10107012969620369No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)