FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440909
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10520.2385979873397912No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7810.17713405714104272No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7110.16125776520778665No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6740.15286601090020843No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6250.14175260654692917No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5890.13358765640982606No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5870.13313404806887588No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG5250.11907218949942051No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5090.11544332277181914No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG4860.11022682685089212No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4480.10160826837283883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)