FastQCFastQC Report
Sun 21 May 2023
EGAF00007930597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440909
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60721.3771549231247264No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10790.24472169994261853No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10780.24449489577214345No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7990.18121653220959427No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7080.1605773526963614No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6630.15037116502498246No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6630.15037116502498246No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6610.1499175566840323No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6270.14220621488787935No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6050.13721652313742747No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5940.1347216772622015No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5060.11476291026039387No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4780.10841239348709145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)