FastQCFastQC Report
Sun 21 May 2023
EGAF00007930598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413764
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17710.4280217708645508No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16720.4040950880211908No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14050.3395655494436442No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13790.33328177415144866No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12440.3006544793650487No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11850.2863951431250665No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9700.23443315513191096No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8130.1964888197136532No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8130.1964888197136532No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6830.16506994325267546No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6770.16361984126216877No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6770.16361984126216877No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6010.145251882715751No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5980.14452683172049766No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5860.14162662773948434No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4870.11769994489612436No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA4800.11600815924053326No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4730.11431637358494214No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4690.11334963892460437No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4550.10996606761342215No Hit

[OK]Adapter Content

Adapter graph