FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413764
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61511.4865962239344168No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23800.5752071229009774No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16920.4089287613228797No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14150.3419823860944886No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14110.34101565143415086No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14100.34077396776906643No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13580.32820641718467536No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10230.2472423893813865No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9490.22935779816513763No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8600.20784795197262207No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8510.20567279898686205No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7340.17739581017198208No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7270.175704024516391No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7020.1696619328892799No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6780.16386152492725323No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6490.15685269863980433No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6240.15081060701269322No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5980.14452683172049766No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5840.14114326040931546No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5660.13679295443779546No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5560.13437611778695102No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4860.11745826123103992No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4730.11431637358494214No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4230.10223219033071992No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4190.10126545567038214No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)