FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490408
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28860.588489584182966No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10430.212680054158986No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7900.16109035741668162No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7130.14538914536467593No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7080.14436958614051973No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6270.1278527267091891No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5850.1192884292262769No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5800.11826887000212069No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5650.11521019232965204No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5510.11235542650201466No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5270.10746154222606483No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5250.10705371853640235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)