FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455015
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16190.3558124457435469No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15830.34790061866092326No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14030.308341483247805No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13490.2964737426238695No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11780.2588925639814072No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11460.2518598287968528No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10100.22197070426249682No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10020.22021252046635825No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG9880.21713569882311573No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9840.21625660692504642No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9460.20790523389338814No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8520.1872465742887597No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7950.17471951474127226No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT7590.16680768765864862No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7490.16460995791347538No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7240.15911563355054228No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6880.15120380646791864No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6720.14768743887564145No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6630.14570948210498555No Hit
ACCAGACACGAAGACGGCGTTCTCATCTTCCAGTTTCAGCAGTT6410.14087447666560443No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6330.13911629286946584No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG6310.1386767469204312No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6210.13647901717525796No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6170.13559992527718867No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6150.135160379328154No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5720.1257101414239091No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5690.12505082250035712No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT5670.12461127655132248No Hit
CACAGTCTGAATTGCTGCATCAACAGTGGATACCGGCGGCGGCG5670.12461127655132248No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG5630.1237321846532532No Hit
GGTTGCACCACGAACCTGCGGATCGCCGTGATCGATGTAGTTCA5370.11801808731580277No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5300.1164796764941815No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5280.11604013054514688No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5230.11494126567256026No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5130.11274353592738702No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4770.10483170884476335No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4760.10461193587024605No Hit
ATCGGCGTCTGCGGTGACACCCATATCTTCCGCAGTCATCTGAA4750.1043921628957287No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4640.10197466017603815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)