FastQCFastQC Report
Sun 21 May 2023
EGAF00007930617

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930617
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455015
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64881.4258870586683954No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35410.7782161027658429No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18050.3966902190037691No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16160.35515312681999495No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13110.28812236959221127No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12290.27010098568179075No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11540.25361801259299144No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11150.24504686658681582No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA10950.24065140709646934No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10890.23933276924936542No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10270.22570684482929132No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10250.2252672988802567No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9370.2059272771227322No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8670.19054316890651957No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8530.18746634726327704No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8000.17581837961385888No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7940.17449974176675495No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7540.165708822786062No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7260.15955517949957695No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG6940.1525224443150226No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6750.14834675779919343No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6600.14505016318143357No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6520.14329197938529498No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6500.14285243343626033No Hit
ATGGAACGTCAGCTGCCAAAAAACGTTCGCC6380.14021515774205245No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6330.13911629286946584No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6240.13713833609880993No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6200.13625924420074062No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG6140.1349406063536367No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5850.12856719009263431No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5790.12724855224553036No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG5760.1265892333219784No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5580.12263331978066658No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5530.12153445490807996No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5510.12109490895904532No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5470.120215817060976No Hit
GCTGAAGAGACTACCATCGAAAACGGCATCT5310.11669944946869884No Hit
GCGCTGTCTTGCGTGGGTGCAGCTGTTGCCC5240.11516103864707757No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5200.11428194674900827No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4880.10724921156445393No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4630.10175488720152084No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4600.10109556827796885No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)