FastQCFastQC Report
Wed 31 May 2023
EGAF00007930618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458670
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16690.3638781694900473No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15900.34665445745307083No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15130.32986678875880265No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13550.29541936468484964No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12360.26947478579370787No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10970.23916977347548346No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10400.2267425382082979No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10320.22499836483746483No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10010.2182396930254867No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG9770.21300717291298757No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9670.21082695619944622No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9200.200579937645802No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8440.18401029062288793No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7980.17398129374059781No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7740.16874877362809865No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7340.16002790677393333No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT7230.15762966838903786No Hit
ACCAGACACGAAGACGGCGTTCTCATCTTCCAGTTTCAGCAGTT7010.15283319161924694No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6670.14542045479320645No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6550.14280419473695685No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG6280.13691760961039526No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6260.136481566267687No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5960.12994091612706304No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5920.1290688294416465No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG5900.12863278609893822No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA5870.12797872108487582No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5860.1277606994135217No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5830.1271066343994593No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5690.12405433100050145No Hit
CACAGTCTGAATTGCTGCATCAACAGTGGATACCGGCGGCGGCG5670.12361828765779319No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5610.12231015762966839No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT5430.11838576754529401No Hit
GGTTGCACCACGAACCTGCGGATCGCCGTGATCGATGTAGTTCA5420.11816774587393988No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5170.11271720409008655No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5020.10944687901977457No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5010.10922885734842044No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4890.10661259729217085No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4880.1063945756208167No Hit
ATCGGCGTCTGCGGTGACACCCATATCTTCCGCAGTCATCTGAA4740.10334227222185885No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4610.10050799049425513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)