FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493272
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT23660.4796542272823108No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20970.42512042037658737No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG17730.359436578601664No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17600.35680111581439855No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16610.33673105304983864No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13470.2730744903420425No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13120.2659790136070971No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12330.2499635089767917No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10930.22158160203701No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT10830.21955432296988275No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10750.21793249971618092No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10730.21752704390275548No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10730.21752704390275548No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG10240.2075933764738319No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9830.19928153229861012No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9770.19806516485833375No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9540.19340242300394103No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8470.1717105369856793No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8240.1670477951312866No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC7760.1573168556090757No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG7710.1563032160755121No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7630.1546813928218103No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7610.15427593700838482No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7490.1518432021278321No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7300.1479913719002903No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7160.14515318120631215No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6960.14109862307205762No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6840.13866588819150488No Hit
GGCGCGCGGTGGGGTCTGCATAGTCGCCGGTGCCCACTGACGCA6500.13177313936327217No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG5990.12143401612092315No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5880.11920400914708315No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5870.11900128124037043No Hit
GTAAGCGCCCTGGGTGGTCTGCATGATAGCACCCGCTTTCGGGG5770.11697400217324316No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5490.11129762078528682No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5300.107445790557745No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5060.10258032079663959No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)