FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493272
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA49320.9998540359071668No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31130.6310919735967174No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23240.47113965520037626No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22930.46485509009228176No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21260.4309995296712564No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG17540.3555847483741222No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15040.30490277169594054No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13340.2704390275547771No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13060.2647626461668207No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA12970.2629380950064062No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12140.24611167874924988No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11620.23556982760018813No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA11030.22360888110413726No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10930.22158160203701No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT10550.21387794158192638No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10530.21347248576850095No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9920.20110608345902461No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9620.19502424625764284No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9170.18590149045557017No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8830.17900874162733746No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8220.16664233931786115No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8130.1648177881574466No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG7950.16116868583661753No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7910.16035777420976663No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC7810.15833049514263936No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC7710.1563032160755121No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7650.15508684863523575No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7570.15346502538153392No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7430.15062683468755575No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6940.14069316725863215No Hit
GTAGGTCCAACCCCTCACCAGACCCCGCAGG6620.1342058742438249No Hit
GGCTACACTTCCGGCCGTAACCTGTACACCA6420.1301513161095704No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6290.12751585332230495No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6250.12670494169545402No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA6220.12609675797531583No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5930.12021764868064679No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5520.111905804505425No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5300.107445790557745No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5230.10602669521075593No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5040.10217486498321413No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5000.10136395335636322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)