FastQCFastQC Report
Wed 31 May 2023
EGAF00007930622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458933
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21910.47741173548208565No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19410.42293755297614244No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG16640.36258015875955746No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16100.35081373533827376No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14610.31834712256473163No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12010.26169397275855083No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11260.2453517180067679No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11000.2396864030261498No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10800.23532846842567434No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10460.22791997960486607No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9890.21549986599351104No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9880.21528196926348725No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9640.21005244774291673No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9360.2039513393022511No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9090.19806812759160922No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8900.19392808972115755No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8480.1847764270601591No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7900.1721384167187803No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG7280.1586288194573064No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC7160.15601405869702115No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7030.1531814012067121No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6980.15209191755659324No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6730.14664449930599893No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6640.14468342873578496No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6590.1435939450856661No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6570.14315815162561854No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6400.13945390721521442No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6340.13814652683507178No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG5700.12420113611355034No Hit
GGCGCGCGGTGGGGTCTGCATAGTCGCCGGTGCCCACTGACGCA5650.12311165246343148No Hit
GTAAGCGCCCTGGGTGGTCTGCATGATAGCACCCGCTTTCGGGG5170.11265260942229041No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4990.10873046828186249No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4920.1072051911716961No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4920.1072051911716961No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4850.10567991406152967No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT4640.10110408273103046No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT4620.10066828927098291No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)