FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494353
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16740.3386244242474507No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9000.1820561420685219No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8820.17841501922715144No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7730.15636599757663044No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7610.15393858234905017No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7430.15029745950767973No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7260.14685862126860766No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6440.1302712838801423No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5850.11833649234453923No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5600.11327937728708029No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5420.10963825444570985No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5150.10417657018365419No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)