FastQCFastQC Report
Sun 21 May 2023
EGAF00007930629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494353
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32240.652165557809905No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17420.35237977720373903No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17090.3457043853278932No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11370.22999759281323262No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9450.19115894917194798No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7800.15778198979271896No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7650.1547477207582436No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7530.1523203055306633No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6820.13795809876747991No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6470.1308781376870374No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6370.12885529166405382No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5840.11813420774224087No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5760.116515930923854No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5380.10882911603651642No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5110.10336743177446076No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)