FastQCFastQC Report
Wed 31 May 2023
EGAF00007930631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457795
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64851.4165729201935364No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15970.34884609923655785No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15840.346006400244651No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9920.21669087692089253No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8540.1865463799298813No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7100.155091252634913No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6940.15159623849102766No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6440.14067431929138588No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6300.1376161819154862No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6020.13149990716368679No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5510.1203595495800522No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5460.11926735766008803No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4920.10747168492447493No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4840.10572417785253226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)