FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424062
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64631.5240695935971627No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15530.36622003386297286No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15520.3659842192886889No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15110.35631582174304705No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14550.34311020558314587No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG14490.34169531813744214No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12340.2909951846663931No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10770.25397229650381314No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10640.2509067070381218No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10630.25067089246383784No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10030.2365220180068009No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9150.21577033546981336No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8830.208224269092727No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7600.17921907645580126No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7470.17615348699010994No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG7340.17308789752441858No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6460.15233621498743108No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6390.15068551296744345No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6000.14148874457036942No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5980.14101711542180154No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5530.1304054595790238No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5500.129698015856172No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5260.1240384660733572No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5020.11837891629054241No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4970.11719984341912268No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4860.11460588310199923No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4830.11389843937914738No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4650.1096537770420363No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4630.1091821478934684No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4630.1091821478934684No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4530.10682400215062891No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4450.10493748555635732No Hit
GAAATGGAAGGCGGCCTGGAACCGGGCGTTT4430.10446585640778944No Hit
GCAGCGGGTCGCCTGCCGGGCTATGGCGTCA4420.10423004183350548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)