FastQCFastQC Report
Sun 21 May 2023
EGAF00007930639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491498
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31760.646187776959418No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27290.555241323464185No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19460.39593243512689774No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12350.2512726399700507No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC11900.2421169567322756No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11720.23845468343716555No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11270.22929900019939045No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8610.17517873928276412No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8210.16704035418251956No Hit
GTTATTTCTCTGACTCGTCGCACCCGTCAGA8040.16358154051491564No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7030.14303211813679811No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6630.13489373303655355No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6390.13001070197640682No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG6230.126755347936309No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5710.11617544730599108No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5510.1121062547558688No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5240.10661284481320371No Hit
GAAAAAGCTATCCCTACCCTGGCAGACGCAG5070.10315403114559978No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5050.10274711189058755No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5040.10254365226308143No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5000.10172981375305698No Hit
GTTCTGGTGCTGAACGAGCAGTCCGCATACC4930.10030559636051417No Hit

[OK]Adapter Content

Adapter graph