FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481243
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31330.6510224564305351No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24530.5097216998481017No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20200.4197463651419345No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16910.35138173438366893No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10800.22441884868974718No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8790.18265200740582202No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7690.15979453207631072No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5810.12072902878587324No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5690.11823548602265382No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5610.11657312418050757No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5340.11096265296326388No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG4850.10078068668011794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)