FastQCFastQC Report
Wed 31 May 2023
EGAF00007930643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448868
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69831.555691205432332No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25810.5750020050437991No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18760.417940240783482No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16160.36001675325485444No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9270.2065195113039914No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7800.17377046258588272No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7280.1621857650801572No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5820.1296594990063894No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5420.1207481932327544No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5030.11205967010346025No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4680.10426227755152963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)