FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519562
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35540.6840377086853927No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30190.5810663597414746No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25940.49926669001967044No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22020.4238185240645005No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18800.3618432448870395No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12780.24597641859874278No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12210.23500563936546554No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11520.22172522239886672No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9800.18862041488792483No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG9520.18323126017684127No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8970.17264542056578427No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8840.1701433130213526No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7900.15205115077700063No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7280.14011802248817273No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7050.1356912168326398No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7010.1349213375881993No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6530.12568278665491317No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5490.10566592629945994No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5270.10143159045503712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)