FastQCFastQC Report
Wed 31 May 2023
EGAF00007930647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485591
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69831.438041479351965No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34140.7030608063164268No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24460.5037160902899765No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19100.39333513182904956No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16030.33011320226280966No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11440.23558920984944118No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11310.23291205973751572No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10000.2059346239942668No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8550.1760741035150981No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8350.17195541103521278No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8130.1674248493073389No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7830.1612468105875109No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7470.15383316412371728No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7250.14930260239584342No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6430.13241596322831353No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6370.13118035548434795No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5870.12088362428463459No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)