FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459472
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC30610.666199463732284No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25520.5554201344151547No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA23780.5175505797959397No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG23560.5127624751889125No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA21870.47598112616220356No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA21700.4722812271476825No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG20310.4420291116760107No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG18610.4050301215308006No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17650.3841365741546819No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT16230.35323153532750634No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG15840.3447435317059581No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA15760.34300240275794824No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG13330.2901156109621479No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12740.2772747849705749No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12480.2716161158895428No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC11540.25115785075042657No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11400.24811087509140928No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT11020.2398405125883623No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT10080.21938224744924606No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG9690.2108942438276979No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9310.2026238813246509No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7810.16997771354946548No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7500.16323083887592715No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7270.1582250931503987No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7030.15300170630636903No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6890.14995473064735176No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6790.14777831946233938No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6690.14560190827732702No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6620.14407842044781835No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6380.13885503360378867No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6120.13319636452275657No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5830.1268847720862207No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5710.12427307866420587No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5180.11273809938364035No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4990.10860291813211687No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4840.10533830135459833No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT4780.10403245464359091No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT4640.1009854789845736No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4630.10076783786607235No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT4620.10055019674757112No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)