FastQCFastQC Report
Wed 31 May 2023
EGAF00007930649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459472
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65041.4155378347320402No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC39030.849453285510325No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25750.5604258801406833No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA25110.5464968485566041No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG24860.5410558205940732No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT24170.5260385834174879No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG23190.5047097538043668No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG20020.4357175192394749No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18630.40546540376780305No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG18260.39741268238325733No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC17650.3841365741546819No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG17010.3702075425706028No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC16440.3578019988160323No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15520.33777901591391857No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC13860.3016505902427134No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13260.2885921231326392No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC13120.28554514747362186No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12380.26943970470453044No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11270.2452815405508932No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11220.24419333495838705No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC11100.2415816415363722No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10610.23091722672981158No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9880.21502942507922135No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9690.2108942438276979No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8970.19522408329560886No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8740.19021833757008044No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8090.1760716648675001No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6850.1490841661733468No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6830.14864888393634434No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6770.14734303722533693No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6640.14451370268482083No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6070.13210815893025038No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5870.12775533656022564No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5840.12710241320472193No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5770.12557892537521329No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5440.1183967684646725No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5280.1149145105686527No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5020.10925584148762056No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4950.10773235365811192No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA4910.10686178918410698No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4860.1057735835916008No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG4830.10512066023609709No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4780.10403245464359091No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4700.10229132569558103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)