FastQCFastQC Report
Wed 31 May 2023
EGAF00007930650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497955
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC32440.6514644897631312No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT27880.5598899498950708No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA26850.5392053498810134No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG26260.5273568896787862No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA23490.47172937313612673No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA23430.4705244449799681No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG22510.45204887991886816No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG21610.4339749575764878No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG19320.38798686628309786No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA17910.3596710546133687No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG17290.3472201303330622No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT17270.34681848761434264No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG14650.2942032914620799No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13820.277535118635218No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG13600.27311704872930287No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC13230.26568665843299094No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12830.25765380405859967No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT11920.23937906035685955No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT11290.22672731471719332No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG9730.19539918265706738No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9310.1869646855639566No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9170.18415318653291965No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8640.17350965448685124No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA8150.16366940787822193No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8010.16085790884718498No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7980.16025544476910564No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7490.15041519816047635No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6970.1399724874737677No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6740.13535359620849272No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6690.13434948941169383No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6650.1335462039742547No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6510.13073470494321776No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6500.13053388358385798No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6070.12189856513138739No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5530.11105421172595917No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5440.10924681949172113No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5430.10904599813236135No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5360.10764024861684288No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5330.10703778453876354No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5170.10382464278900705No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG5030.1010131437579701No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)