FastQCFastQC Report
Sun 21 May 2023
EGAF00007930651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497955
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC43580.8751794840899277No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30120.6048739343916619No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG29190.5861975479712022No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA28810.5785663363155306No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG27270.5476398469741242No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG26180.525750318803908No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT25870.5195248566637547No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG22470.45124559448142904No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG21040.42252814009298034No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG20630.41429446435922923No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC19360.388790151720537No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG19350.3885893303611772No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC18010.3616792682069665No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16660.334568384693396No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC15550.3122772138044602No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14430.2897852215561647No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC14340.28797782932192667No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13880.27874004679137676No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG13340.2678956933859485No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC12660.2542398409494834No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC12040.24178891666917693No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11360.2281330642327118No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT10930.21949774578024117No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10780.21648542538984447No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10490.2106616059684108No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10090.20262875159401955No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8620.17310801176813165No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8340.16748501370605778No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC8020.16105873020654476No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7330.14720205641071984No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6860.13776345252081013No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6840.13736180980209053No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6680.13414866805233405No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6600.1325420971774558No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6510.13073470494321776No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6350.12752156319346125No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT6090.12230020785010692No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC5770.11587392435059393No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5610.11266078260083742No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5430.10904599813236135No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5410.1086443554136418No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5330.10703778453876354No Hit
CGTCTGAAACTGGCAGCGATGGGCCTGCCGA5200.10442710686708638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)