FastQCFastQC Report
Wed 31 May 2023
EGAF00007930657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517287
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30890.597153997684071No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12900.24937800485997133No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12700.24551167920322758No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10350.2000823527364886No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9010.17417797083630557No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8300.16045251475486527No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7590.146727058673425No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7220.13957435620844907No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5470.10574400671194133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)