FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457774
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60711.3262002647594664No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25030.5467763568922656No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16310.35628934801889145No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9020.19704046101351325No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8680.189613215254689No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7750.16929751362025802No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7080.15466147050728088No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6540.14286525665503066No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6150.13434576887284994No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5800.1267000747093544No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5770.1260447294953405No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5700.12451559066264138No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5570.12167576140191447No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5270.11512230926177547No Hit
ATGCAAGATCAGACCGTTCCGCAGGAAGCAA5230.11424851564309027No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4930.10769506350295124No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4900.10703971828893734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)