FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501819
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17640.3515211659980989No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13580.27061550080806024No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10950.21820616596820766No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9900.1972822870397494No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT9470.1887134604309522No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7470.14885845294817454No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7010.13969180122713568No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT6200.12355052319661074No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5940.11836937222384965No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5830.11617734681229686No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5740.11438387147557187No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5610.11179329598919133No Hit
ACGCACTGCGCGGGTACGTACAGACGGTTTGGAAGTACCCTGAG5520.10999982065246633No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5520.10999982065246633No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5380.1072099701286719No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5290.10541649479194691No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5060.10083316893142746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)