FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501819
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29670.5912490360070065No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28320.5643469059561316No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17970.35809724223275724No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10240.2040576383118216No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA10170.2026627130499244No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7930.1580251046692134No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7570.15085120332231342No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7540.15025337821007176No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6620.13192007476799403No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6350.12653964875781906No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6350.12653964875781906No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6310.1257425486081635No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG6060.12076067267281629No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6050.1205613976354024No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6020.11996357252316076No Hit
ATGCAAGATCAGACCGTTCCGCAGGAAGCAA5350.10661214501643022No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5310.10581504486677468No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5150.10262664426815245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)