FastQCFastQC Report
Wed 31 May 2023
EGAF00007930662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519674
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23720.4564399989224014No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21600.41564519294788654No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20580.39601750328090307No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19400.373310960332824No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19330.3719639620223448No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18350.3531059856756351No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17200.33097672771776154No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16630.32000831290385895No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15500.2982639116061223No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15210.2926834900341368No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG14940.2874879251222882No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14670.28229236021043963No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12970.24957954409880043No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT11550.22225472122907822No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11250.21648187132702426No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11010.21186359140538108No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10650.20493617152291627No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9850.189541905117439No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT9620.1851160535258643No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9510.18299934189511116No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT8940.1720309270812086No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8260.15894580063655292No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8030.1545199490449782No Hit
CATGCATTTCGGACGACCCAGTGCCACGTCCAGATCGGTACAGT7390.1422045359205964No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7280.14008782428984323No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTACCCA7200.13854839764929552No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6950.13373768939758385No Hit
TGGACGCACTTCGTGCAGGATGGACGCTTTTGCGCTCGGGGTAG6820.13123612110669383No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6780.13046640778641996No Hit
GGTGAATTTGCTCGGGTCCATAGAAAAGGACTGGCCCGCGCTAG6570.12642541285498216No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6330.12180713293333897No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5750.11064628978936794No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT5530.10641286652786171No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5480.10545072487751937No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5390.10371886990690317No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5360.10314158491669778No Hit
GCAACCGTCGTCTTTACGCGGACGGGACCATGCAGTCATCAGGC5320.10237187159642391No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5250.10102487328594466No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)