FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480571
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20670.4301133443341359No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19540.40659964916734465No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19490.40555922017766366No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18290.38058892442531905No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18060.37580295107278633No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17880.37205740670993465No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16270.33855559324220563No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15540.32336532999286266No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14670.3052618655724128No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13910.2894473449292613No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13430.2794592266283234No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12760.26551747816659765No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11760.24470889837297713No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT10590.22036286001444116No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10380.21599305825778084No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10060.20933431272382227No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9280.1931036204847983No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9110.18956616191988282No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8910.1854044459611587No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT8350.17375164127673123No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT7870.16376352297579339No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7570.15752094903770722No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7460.15523200526040898No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7150.14878134552438663No Hit
CATGCATTTCGGACGACCCAGTGCCACGTCCAGATCGGTACAGT7060.14690857334296076No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7030.14628431594915214No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTACCCA6570.13671236924408672No Hit
TGGACGCACTTCGTGCAGGATGGACGCTTTTGCGCTCGGGGTAG6320.1315102242956816No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6250.13005362371012816No Hit
GGTGAATTTGCTCGGGTCCATAGAAAAGGACTGGCCCGCGCTAG5820.12110593439887134No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5560.11569570365253No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5380.11195015928967833No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5380.11195015928967833No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5360.11153398769380592No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA5110.10633184274540079No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT5070.10549949955365598No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC4860.10112969779699565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)