FastQCFastQC Report
Wed 31 May 2023
EGAF00007930668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450005
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8380.1862201531094099No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8200.18222019755336052No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7170.15933156298263354No Hit
AGTCGGACCCTGCTGGCCTGCCGGCGCACGCAGTGCCAGCTGCA6760.1502205531049655No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6060.13466517038699571No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATGGGA6010.1335540716214264No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5300.11777646915034276No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5040.11199875556938256No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4880.10844323951956089No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4880.10844323951956089No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4530.100665548160576No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)