FastQCFastQC Report
Sun 21 May 2023
EGAF00007930673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465835
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66451.4264707460796204No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35700.7663657732888254No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16640.35720802430044973No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC13950.2994622559489948No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13200.28336213466141447No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10540.22626037116146278No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG8970.1925574505994612No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8260.17731600244721846No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7530.1616452177273069No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7400.1588545300374596No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7040.15112647181942104No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6500.1395343844923632No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6170.13245033112582782No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5630.12085824379876994No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5480.11763821954125386No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5280.11334485386456578No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4910.1054021273626928No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4910.1054021273626928No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4710.10110876168600469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)