FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505845
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17450.3449673318902035No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG12780.2526465616937995No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10790.21330644762723758No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10250.2026312407951052No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA9880.19531674722494044No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9410.18602536350067708No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9300.18385078433116864No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8270.1634888157439532No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7910.15637201118919827No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7530.14885982860362365No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7520.14866213958821378No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7180.14194071306427858No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC6720.1328470183554251No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5900.11663651909181666No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG5830.11525269598394765No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5760.11386887287607864No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5300.10477517816722515No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5210.10299597702853641No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5060.10003064179738853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)