FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505845
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30240.5978115825994129No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22690.44855637596496956No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17530.3465488440134824No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12720.25146042760134035No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10770.21291106959641787No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG10320.20401506390297425No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10030.19828208245608833No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8100.16012810248198558No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8100.16012810248198558No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8040.15894196838952643No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8020.15854659035870672No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7930.15676738922001798No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7730.1528136089118208No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7370.1456968043570659No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG7290.14411529223378705No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7210.14253378011050816No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7010.13857999980231098No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6620.13087012820132649No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6380.12612559183148989No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6310.12474176872362087No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5340.10556593422886458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)