FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930683

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930683
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506318
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG72331.4285488566474034No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33430.6602569926409885No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16280.32153705773841734No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15070.2976390331767782No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13330.26327327884847074No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11850.23404263723588734No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10310.203626969611983No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9770.19296173551009446No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9210.1819014927377656No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9080.17933393637990352No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8880.1753838496755004No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7680.15168332944908142No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6910.13647549563712924No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6610.1305503655805245No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6610.1305503655805245No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6220.12284769650693832No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5950.11751507945599407No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5940.11731757512077391No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5890.11633005344467312No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5600.11060242772328853No Hit

[OK]Adapter Content

Adapter graph