FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523375
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34680.6626224026749463No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22780.43525197038452357No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13740.26252686887986626No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT13120.2506806782899451No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11950.2283257702412228No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9370.1790303319799379No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9000.1719608311440172No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7020.13412944829233342No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6870.13126343443993313No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5970.11406735132553142No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5910.11292094578457129No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5730.10948172916169095No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5720.10929066157153093No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5670.10833532362073083No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5280.10088368760449008No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)