FastQCFastQC Report
Sun 21 May 2023
EGAF00007930687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499903
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68291.3660650166132229No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT55661.1134160027045248No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA40160.8033558510351008No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG30520.6105184405774721No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG22470.4494872005169003No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21420.4284831257263909No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG21300.426082660036047No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20010.40027765386484976No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG13650.2730529722766216No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG10730.21464164047825277No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9680.1936375656877434No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7340.14682848472603685No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7140.14282770857546365No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6720.1344260786592599No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG6320.12642452635811346No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6280.12562437112799882No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5870.11742278001932376No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5770.11542239194403715No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5740.11482227552145116No Hit
TACGACGACTTCCATACCGATGAAGATAAAC5700.11402212029133652No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5640.11282188744616455No Hit
AACACTAATCATTCTCCGCAGAAACACCCAA5210.10422021872243215No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5200.10402017991490349No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5190.10382014110737482No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5140.10281994706973153No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5110.10221983064714554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)