FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544856
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT61691.1322257624032772No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA45170.8290263849530886No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34350.6304418048071416No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG33200.6093353106141807No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG24400.44782474635500025No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23460.430572481536406No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG23080.4235981617161232No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21720.3986374381487953No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG14830.2721820077231415No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG12640.23198790139045913No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG10940.20078699693129928No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8720.16004228640227877No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8350.1532515013141087No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC7860.14425829944058616No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG6670.12241766631917424No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6650.12205059685494882No Hit
TACGACGACTTCCATACCGATGAAGATAAAC6550.12021524953382179No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6220.11415860337410251No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6100.11195618658875006No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6070.11140558239241194No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5920.10865256141072137No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5780.1060830751611435No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5630.10333005417945292No Hit
AACACTAATCATTCTCCGCAGAAACACCCAA5520.10131117212621317No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5460.10020996373353694No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)