FastQCFastQC Report
Sun 21 May 2023
EGAF00007930691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503377
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32220.6400769204790843No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16110.32003846023954213No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10140.2014394777671606No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9330.1853481585372395No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8890.17660719500493666No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8550.16985281409361175No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8000.15892660967823322No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7930.15753600184354866No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7850.15594673574676635No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7240.14382858175880106No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6350.12614799643209762No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6260.1243600720732175No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6110.1213801981417506No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5040.10012376409728693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)