FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467266
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67391.4422192070469497No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14190.3036814148686187No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8940.19132571169312554No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8090.17313478832185522No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8010.1714227014163239No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7930.16971061451079258No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7040.15066364768675658No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7010.15002161509718234No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6900.14766749560207676No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6120.13097464827314634No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5840.1249823441037867No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5270.11278372490187603No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5200.11128564885953612No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)