FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492809
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30040.6095667895675606No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11750.23842908713111977No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9510.19297537179718713No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9270.1881053308685515No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9180.18627906552031315No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7280.147724574835281No Hit
GAAACCACTATCGCAGATAATAGCAAACGCT5450.11059051275443428No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5410.10977883926632834No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5360.10876424740619592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)