FastQCFastQC Report
Wed 31 May 2023
EGAF00007930698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439219
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12030.2738952549866923No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10000.22767685368802354No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9830.22380634717532713No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8840.2012663386602128No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8740.19898957012333254No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7200.16392733465537693No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7200.16392733465537693No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6270.14275338726239076No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6260.14252571040870274No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6180.14070429557919853No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6160.1402489418718225No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5950.135467727944374No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5950.135467727944374No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT5510.12544994638210097No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5500.12522226952841295No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5490.12499459267472492No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5250.11953034818621236No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5120.11657054908826804No Hit
GTTGGCGGTGCCGGTAATGGTCGGTACGGAGTTACGGAAGCCGG4990.11361074999032374No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4870.11087862774606745No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4850.1104232740386914No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4840.11019559718500338No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4830.10996792033131535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)