FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439219
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60511.3776726416662304No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24400.5555315229987774No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10030.22835988424908757No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9660.2199358406626307No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8610.19602977102538824No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC8500.19352532563482No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8120.18487360519467508No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7630.17371743936396195No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6770.15413722994679194No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6420.1461685400677111No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6360.14480247894558296No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6300.14343641782345481No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6280.14298106411607878No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6190.14093197243288655No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6080.13842752704231828No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5920.13478469738330992No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5640.12840974548004527No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5570.12681600750422908No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5500.12522226952841295No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG5450.12408388525997283No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5320.12112408616202851No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5000.11383842684401177No Hit
AACTCTGGTTTTGATAACAACGCTCGCGACG4760.10837418235549919No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4710.10723579808705908No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4620.10518670640386686No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4570.10404832213542674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)