FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483457
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29640.6130845142380812No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26910.5566162037161526No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11680.2415933578374085No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10090.20870522094002159No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9870.2041546611177416No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC9240.1911235125357581No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8710.18016080023662912No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8480.1754033967860637No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8020.16588858988493288No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7720.1596832810363693No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7430.15368481581609117No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7310.15120269227666577No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7100.14685897608267126No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6900.1427221035169622No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6590.1363099510401132No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6530.13506888927040048No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6480.13403467112897322No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6460.13362098387240232No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6450.13341414024411685No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6360.1315525475895478No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6000.12410617697127149No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5550.11479821369842613No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5520.11417768281356977No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG5450.11272977741557161No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5320.11004081024786072No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5230.10817921759329165No Hit
AACTCTGGTTTTGATAACAACGCTCGCGACG5000.10342181414272625No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4870.10073284697501535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)