FastQCFastQC Report
Wed 31 May 2023
EGAF00007930702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424216
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20080.47334376826899505No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18360.4327983857280253No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG10170.23973636072189639No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9590.22606408056273217No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6920.16312444603692458No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6270.14780206309993024No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6040.14238029682991682No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6010.1416731099251325No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5650.1331868670677202No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5610.13224395119467441No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5280.12446489524204651No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5020.11833594206724876No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4700.11079261508288231No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4450.104899390876346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)